import time
import stringmatchers

if __name__ == '__main__':
    # Reading the data for the test
    datafile = open("sample_sequence.txt")
    sequence = datafile.read(100000)
    search_sequence = "ATCGATCGATCGC"

    # This way of calling functions will not be on the exams
    funs = (stringmatchers.get_indices,stringmatchers.basic_stringmatch,\
             stringmatchers.early_exit_stringmatch)
    for f in funs:
        t1 = time.time()
        f(sequence, search_sequence)
        t2 = time.time()
        print "Elapsed time for",f, str(t2 - t1)