import time
import stringmatchers

if __name__ == '__main__':
    # Reading the data for the test
    datafile = open("sample_sequence.txt")
    sequence = datafile.read(100000)
    search_sequence = "ATCGATCGATCGC"
    
    # Determine how long the stringmatching function takes
    t1 = time.time()
    stringmatchers.get_indices(sequence, search_sequence)
    t2 = time.time()
    print "Elapsed time for get_indices: " + str(t2 - t1)
    
    t1 = time.time()
    stringmatchers.basic_stringmatch(sequence, search_sequence)
    t2 = time.time()
    print "Elapsed time for basic_stringmatch: " + str(t2 - t1)
    
    t1 = time.time()
    stringmatchers.early_exit_stringmatch(sequence, search_sequence)
    t2 = time.time()
    print "Elapsed time for early_exit_stringmatch: " + str(t2 - t1)